That spec doesn't regulate what a designer chooses to do. It just defines the acceptability of downstream processes like placement, soldering, etc.
For the record, the designer can break every good guideline if he wants to, as long as he doesn't hold the assembler responsible for the result, thus the need for AABUS (As Agreed Between User and Supplier)
UNLESS your condition was caused by the assembler placing the caps or connector INCORRECTLY, 
you should maybe get a signed waiver for the design to CYA